Geoff Hyde

Stories from Geoff Hyde

Saturday, September 10th, 2011
Did you know that NCBS has its own YouTube channel? We do, and we are always eager to add new content.

Yesterday two new videos were uploaded and if you watch them you will see we are more than happy to host light-hearted, and technically unsophisticated, productions. It's YouTube after all!

Saturday, June 25th, 2011
As in many parts of the world, soil salinity is a chronic condition in cultivable lands across most of India. Water provided by irrigation is saltier than rain, and so increased dependence on irrigation, and inadequate drainage systems, are causing soil salt to build up to toxic levels. Plant scientists are trying to develop crop varieties and management strategies that lead to higher salt tolerance. Pannaga Krishnamurthy and M.K. Matthew, from NCBS and their international colleagues* recently developed an elegant and practical technique to induce salt tolerance in rice, reported in the Journal of Experimental Botany.
Friday, June 3rd, 2011

Sandeep Krishna recently joined the NCBS faculty. As playful and fun to talk to as he professes to be below, he agreed without hesitation to take part in a hypothetical discussion. This is the set-up: Sandeep has just boarded a train to Chennai and, taking his seat, he finds himself next to the sharp-minded matriarch of the Bhatia dynasty, Mrs Lakshmi Bhatia. She has a vast reservoir of disposable cash and is eagerly looking for worthwhile projects to finance. Let's eavesdrop on their conversation as they watch the dry and dusty southern Indian landscape roll by...

So Sandeep, please tell me about this research that you do in Bangalore.

Sandeep: Sure. I do a lot of theoretical work. I'm interested in what one could call basic science, not that I think there is a sharp line between basic and applied research. We are trying to understand phenomena at many different scales, the way that organisms function, how they are built, why they are built that way, how they manage to interact with the environment. More specifically, I focus on cells and information: how do cells get information about their environment, how do they deal with, and make decisions based on, all this information? We know that there are regulatory networks that determine these decisions, I want to understand the principles that govern the operation and evolution of those networks.

Tuesday, May 24th, 2011

Vatsala Thirumalai, a recent addition to the NCBS faculty line-up, can barely remember a time when she wasn't fascinated by neuroscience. In the interview below she tells how she is particularly interested in how the growth of the nervous system is coupled to the overall growth of an animal. A humble person, Vatsala explains her own growth as a developmental biologist largely in terms of the wonderful mentors she has had throughout her career.

G: How did you get into science?

V: I really was interested in neuroscience from the very beginning, that's what brought me into science. The interest in neuroscience came from two or three different avenues. One was that I liked biology a lot but if you looked in high school biology textbooks, then in physiology there are lessons on how respiration works, how circulation works, how the kidney works, and all that, but when you go to the nervous system, there was nothing really given in the textbooks. They only covered that simple monosynaptic reflex arc - you hit your kneecap and your leg flies up. And then they describe the different regions of the brain, cerebrum, cerebellum, spinal cord and so on. But that was about it.  They never told you what was really going on in these brain regions, in the type of detail you would find for, say, the circulatory system. You know: all the chambers of the heart and how the flow goes from one to the next, through the lung, the oxygenation. When I asked my teacher Ms. Getsie about it, she told me that that was because we didn't know much about how the brain works. That piqued my interest in neuroscience. And on top of that philosophically I was interested in the nature of thoughts, why do we have thoughts, and what are they made of, is there a soul etc etc.,  so I really wanted to follow neurobiology and be a scientist.

Saturday, April 2nd, 2011
In 1492 Christopher Columbus set sail to find India, but never did. Roll forward the centuries, and the suave biological pirate, Vivek Malhotra, a more successful veteran of Indo-Spanish reconnaissance, will shortly attempt landfall in Bangalore. Vivek, also professor at the Centre for Genomic Regulation, is one of a crew of 11 scientists from Barcelona, and he shares co-captaining duties with Enrique Martin-Blanc, professor at The Molecular Biology Institute of Barcelona. What draws the Indian and Spanish teams together is a commitment to fundamental biological research of the highest calibre. Over the course of two days, April 6-7, the visiting scientists will deliver lectures at NCBS and participate in discussions with their colleagues aimed at forging collaborative scientific links between the two sides. Full details and the programme can be accessed using this link.
Saturday, February 26th, 2011

The last NCBS photo competition was such a great success, both in terms of participation and quality, that we have decided to go for broke with a competition every month! Upi has been thinking deeply about this and has come up with some inspired ways to highlight the superior lenscraft of our campus folk -- and to reward the winners in a way we know they will appreciate. Photos that win an award will be printed up on a grand scale, and gloriously framed, all at NCBS's expense, and then granted positions of honour in the NCBS Reception area. After a month, when it comes time for the next batch of winners to take their turn in the limelight, the departing masterpieces will be gifted to their creators.

Tuesday, February 15th, 2011

Namrata Jayanth, a PhD student in Mrinalini Puranik's lab at NCBS was recently awarded a highly competitive travel award to attend the 2011 annual meeting of the American Society for Biochemistry and Molecular Biology in Washington. Below, Namrata talks about the conference and her research.

Namrata, is this your first big international conference?

Wednesday, February 2nd, 2011

Aswin Sai Narain Seshasayee has recently returned to his favourite place in the world, south India, to take up a faculty position at NCBS. In the interview below, Aswin tells how his interests in genomics and bacteria were initiated, how his career took him from Chennai to Cambridge, and what he thinks about his current research on global regulators of transcription in the bacterium E. coli.

Hi Aswin. Could you tell us a bit about your early life and how you got into science?

I was born and brought up in Chennai. My parents moved there in the 70s, well before I was born in 1983. I went to the local school, but moved to a bigger school when I was 11. It had a more modern approach - less mugging up! 

Monday, January 10th, 2011
One of the leading US research centres, the Howard Hughes Medical Institute, home to 15 Nobel laureates since 1987, recently announced an international early career scientist program, which will support up to 35 scientists working in selected countries outside the United States. The program will support investigators who "are, or have the potential to become, scientific leaders". India is one of the eligible countries for applicants. The International Early Career Scientist Program will select and support highly qualified scientists who are in the critical beginning stages of their independent careers. HHMI International Early Career Scientists will receive very attractive five-year grants—$US250,000 in the first year and $US100,000 for each of the following four years. While applicants will be currently working outside of the US, they must have trained in the United States at the doctoral, medical or postdoctoral level. Applications close February 23, 2011 and full information can be found at this site: http://www.hhmi.org/research/competitions
Saturday, January 8th, 2011

The NCBS news site has just celebrated its first year of existence, so it is time to take a closer look at what was achieved in 2010. The interest in the news site has been much greater than I would have ever expected. We have been monitoring its access using Google Analytics, which tells us that overall there were 95,007 pageviews in 2010, from 28,704 visits. The average visit lasted 3:24 minutes and perused 3.31 pages. Visitors logged in from 115 countries including such exotic locations as Guinea-Bissau, Kiribati and Côte d’Ivoire. The cities tally was even more remarkable - 1,518 - and many of the place names also tantalise as travel destinations: San Cristobal de la Laguna (Tenerife), Dnepropetrovsk (Ukraine), and Steamboat Springs (USA). I see there is an obvious need to extend the evaluation of our reader base by some on-location reporting!

Saturday, October 9th, 2010

The family tree of the Tata Institute of Fundamental Research, which so far includes Mumbai, Pune and Bangalore, will soon have a fourth major branch: TIFR Hyderabad. The foundation stone will be laid by PM Manmohan Singh on October 19, as reported recently in the Times of India. TIFR Director Mustansir Barma and NCBS Director Prof. K. VijayRaghavan welcome and encourage all interested parties at NCBS to join them in Hyderabad for the event. See below for more details.

For those at NCBS who cannot make it, the PM's visit will be covered in a webcast, and food and refreshments will help to mark the occasion.

Saturday, October 9th, 2010
Remember the last monsoon drizzle and the smell from the moist soil, or that moment when you discovered the gas was leaking in your kitchen? These examples tell us that we can differentiate between a variety of odors and their intensities. We possess this ability because olfactory receptor neurons (ORNs) in our nose can sense different odorants, just our tongue’s taste buds can detect different flavours. How does this smell sense develop? Do we ‘learn’ to smell and discern different odors and their intensities through experience or are these abilities that we are born with? Or is it a combination of both processes? If learning is involved, at which development stage do we ‘learn’? These are some of the questions central to understanding the experience-dependent modification of animal behavior.
Saturday, July 24th, 2010
In the last month three NCBS students added their names to the Centre’s honour roll of prize-winning conference presenters.  Manivannan S. from Gaiti Hasan’s calcium signaling group won one of the best poster awards at the 43rd Annual Meeting of the Japanese Society of Developmental Biologists, held in Kyoto.  Girish Arjun Punjabi and Shivani Jadeja, respectively, won first and joint second prizes for best talks at the first Student Conference on Conservation Science (SCCS), Bangalore. They were reporting the results of research projects done within the M.Sc Wildlife Conservation programme run at NCBS in conjunction with the Wildlife Conservation Society-India and the Centre for Wildlife Studies.
Monday, June 7th, 2010

A team of neuroscientists, led by Prof. Sumantra Chattarji at the National Centre for Biological Sciences, Bangalore has identified  previously unrecognised synaptic defects in an area of the brain that is involved in the debilitating emotional symptoms of Fragile X Syndrome (FXS), the leading genetic cause of autism and mental retardation. The study is of potential therapeutic significance because it also shows that even a relatively brief pharmacological treatment is capable of correcting some of these defects in mice that were genetically engineered to model FXS. The work, done together with collaborators at New York University, will be reported in the online early edition of the Proceedings of the National Academy of Sciences the week of June 7-11.

Friday, May 21st, 2010

“In 2002, the world’s leaders agreed to achieve a significant reduction in the rate of biodiversity loss by 2010. Having reviewed all available evidence, including national reports submitted by Parties, this third edition of the Global Biodiversity Outlook concludes that the target has not been met. Moreover, the Outlook warns, the principal pressures leading to biodiversity loss are not just constant but are, in some cases, intensifying.”
Ban Ki-moon, Secretary General United Nations, in the Foreword to “Global Biodiversity Outlook 3”, 2010.

Sunday, May 16th, 2010
Overlooking 1600km of the peninsula's west coast, the Western Ghats are the most striking geographical feature of south India. With their altitudinal range (average elevation of 1200m, highest point 2695m), a latitudinal spread  of 13deg, and a 70% drop-off in monsoonal rainfall between the western and eastern slopes, it is no surprise that the variety of plants and animals supported by the Western Ghats is also extraordinary. In the Western Ghats’ many habitats, ranging from montane and tropical evergreen forests, to dry deciduous forests, to montane grasslands, one can find about 5000 plant species, 139 mammal species and over 500 different birds. The Western Ghats’ ecological significance is underscored by its designation as one of the world’s biodiversity hotspots.
Sunday, May 9th, 2010
I must admit I have often doubted whether humans are psychologically equipped to take on challenges like overpopulation and global warming. These problems require cooperation on a grand scale, something that our evolutionary history, most of it spent living in tribes, might not have prepared us for. But I was heartened to find that this bleak outlook is out of sync with recent findings of Indian biologists, including some from NCBS, who have examined the nature and genetic basis of social adaptivity in some of our primate cousins, most particularly the Bonnet Macaques of southern India. Their results, including a paper just published in Behavior Genetics (see Abstract here), also made me aware of an idea that is now gaining momentum in human psychology: that as a species we possess more psychological flexibility than previously thought, and that many of our apparent weaknesses are actually indicators of our species’ remarkable capacity to cope with change. Maybe we are not as narrowly hardwired as many of us have believed.
Sunday, May 2nd, 2010

NCBS prides itself on the interdisciplinarity of its biology. Investigations in more traditional areas are enriched by contributions from researchers with strengths in physics, mathematics, informatics, chemistry and nanotechnology. The benefits of such cross-fertilisation were exemplified last year when a DNA-based pH probe developed by Yamuna Krishnan’s nanobiology team was quickly shown to actually work in living cells in collaboration with Jitu Mayor’s team. (see Nature News article). 

Monday, April 19th, 2010

Science seems to attract a naturally cautious breed. When you actually start doing research, however, you soon realise that an entirely new level of cautiousness is called for. The perils of "confirmation bias", Murphy’s Law, and the sheer technological complexity of even a routine experiment can quickly humble the researcher and drive home the value of taking every aspect of a project very, very seriously. Nature does not yield her secrets easily.

Scientists learn the many aspects of "taking things seriously" largely by trial and error, or via the informal advice of their colleagues. Last week however thirty NCBS researchers had the benefit of a more systematic approach to education in this area: a 3-day workshop that provided an introduction to a consolidated body of knowledge called Good Laboratory Practice (GLP).

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